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  • Công bố khoa học và công nghệ Việt Nam

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Applying bioinformatics to analyze auxinrelated genes in robusta coffee genome (Coffea canephora L.)

Tạp chí Khoa học Tây Nguyên

2024

3

1-10

Coffea canephora, which belongs to the Rubiaceae family, is one of the most popular cultivated coffea worldwide. In this study, we identified and analyzed candidate genes that involved in auxinrelated gens in the C. canephora genome. The results showed that genome of C. canephora consists of 152 protein-coding genes related to auxin which are divided into 7 main groups depending on domain and motif: Auxin-induced protein; Auxin-binding protein; Auxin transporter-like protein; Auxin carrier component; Auxin response factor; Auxin-responsive protein; Auxin signaling protein. Using SMART software to analyze protein structure, the result indicated that there are some characteristic domains involved in auxin response such as EamA; AUX_IAA; Auxin inducible; Aldo_ket_red; Cupin; Aa_ trans; B3, Auxin_resp; Mem_trans; B561; GH3; and LRR domain. The study on candidate proteincoding genes relating to auxin is important for elucidating protein functions involved in various cellular processes, growth, development and climate change adaptation of C. canephora.